A DNA Based Migration Modeling of the Lizards in Florida Scrub Habitat

R. R. Hashemi; A. A. Bahrami; D. Swain; A. Schrey; N. R. Tyler

doi:10.1016/B978-0-12-804203-8.00011-0

A DNA Based Migration Modeling of the Lizards in Florida Scrub Habitat

R. R. Hashemi, A. A. Bahrami, D. Swain, A. Schrey, N. R. Tyler

Research output: Contribution to book or proceeding › Chapter

Abstract

Empirical migration models deliver migration patterns using collected data in multiobserve-record sessions of the migratory species' behavior. Such modeling is time-consuming, costly, and is not fit for investigation of habitat migration. As an alternative, use of collected data in one-time-test-record session reduces the observation time and cost significantly. However, new methodologies are needed to deliver the migration patterns. In this chapter, we introduce such methodology, Expansion-CONtraction (ECON), which is a hybrid clustering technique following a two-phase process - expansion and contraction. ECON (a) clusters the data set once using the coordinates of the point of capture and the second time using DNA markers and (b) maps the tightly grid-dense (TGD) DNA clusters over the TGD location clusters producing one trivial, and seven nontrivial migration patterns along with their features.

Original language	American English
Title of host publication	Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology: Systems and Applications
DOIs	https://doi.org/10.1016/B978-0-12-804203-8.00011-0
State	Published - Jan 1 2016

Keywords

DNA based
Florida scrub
Habitat
Lizards
Migration modeling

DC Disciplines

Biology
Biochemistry, Biophysics, and Structural Biology

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10.1016/B978-0-12-804203-8.00011-0License: Unspecified

https://doi.org/10.1016/B978-0-12-804203-8.00011-0

Cite this

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title = "A DNA Based Migration Modeling of the Lizards in Florida Scrub Habitat",

abstract = "Empirical migration models deliver migration patterns using collected data in multiobserve-record sessions of the migratory species' behavior. Such modeling is time-consuming, costly, and is not fit for investigation of habitat migration. As an alternative, use of collected data in one-time-test-record session reduces the observation time and cost significantly. However, new methodologies are needed to deliver the migration patterns. In this chapter, we introduce such methodology, Expansion-CONtraction (ECON), which is a hybrid clustering technique following a two-phase process - expansion and contraction. ECON (a) clusters the data set once using the coordinates of the point of capture and the second time using DNA markers and (b) maps the tightly grid-dense (TGD) DNA clusters over the TGD location clusters producing one trivial, and seven nontrivial migration patterns along with their features.",

keywords = "DNA based, Florida scrub, Habitat, Lizards, Migration modeling",

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doi = "10.1016/B978-0-12-804203-8.00011-0",

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AU - Hashemi, R. R.

AU - Bahrami, A. A.

AU - Swain, D.

AU - Schrey, A.

AU - Tyler, N. R.

PY - 2016/1/1

Y1 - 2016/1/1

N2 - Empirical migration models deliver migration patterns using collected data in multiobserve-record sessions of the migratory species' behavior. Such modeling is time-consuming, costly, and is not fit for investigation of habitat migration. As an alternative, use of collected data in one-time-test-record session reduces the observation time and cost significantly. However, new methodologies are needed to deliver the migration patterns. In this chapter, we introduce such methodology, Expansion-CONtraction (ECON), which is a hybrid clustering technique following a two-phase process - expansion and contraction. ECON (a) clusters the data set once using the coordinates of the point of capture and the second time using DNA markers and (b) maps the tightly grid-dense (TGD) DNA clusters over the TGD location clusters producing one trivial, and seven nontrivial migration patterns along with their features.

AB - Empirical migration models deliver migration patterns using collected data in multiobserve-record sessions of the migratory species' behavior. Such modeling is time-consuming, costly, and is not fit for investigation of habitat migration. As an alternative, use of collected data in one-time-test-record session reduces the observation time and cost significantly. However, new methodologies are needed to deliver the migration patterns. In this chapter, we introduce such methodology, Expansion-CONtraction (ECON), which is a hybrid clustering technique following a two-phase process - expansion and contraction. ECON (a) clusters the data set once using the coordinates of the point of capture and the second time using DNA markers and (b) maps the tightly grid-dense (TGD) DNA clusters over the TGD location clusters producing one trivial, and seven nontrivial migration patterns along with their features.

KW - DNA based

KW - Florida scrub

KW - Habitat

KW - Lizards

KW - Migration modeling

UR - https://digitalcommons.georgiasouthern.edu/biology-facpubs/151

UR - https://doi.org/10.1016/B978-0-12-804203-8.00011-0

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ER -

A DNA Based Migration Modeling of the Lizards in Florida Scrub Habitat

Abstract

Keywords

DC Disciplines

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