Modeling and analysis of ensemble average solvation energy and solute-solvent interfacial fluctuations

Yuanzhen Shao, Zhan Chen, Shan Zhao

Research output: Contribution to journalArticlepeer-review

Abstract

Variational implicit solvation models (VISMs) have gained extensive popularity in the molecular-level solvation analysis of biological systems due to their cost-effectiveness and satisfactory accuracy. Central in the construction of VISM is an interface separating the solute and the solvent. However, traditional sharp-interface VISMs fall short in adequately representing the inherent randomness of the solute-solvent interface, a consequence of thermodynamic fluctuations within the solute-solvent system. Given that experimentally observable quantities are ensemble averaged, the computation of the ensemble average solvation energy (EASE)-the averaged solvation energy across all thermodynamic microscopic states-emerges as a key metric for reflecting thermodynamic fluctuations during solvation processes. This study introduces a novel approach to calculating the EASE. We devise two diffuse-interface VISMs: one within the classic Poisson-Boltzmann (PB) framework and another within the framework of size-modified PB theory, accounting for the finite-size effects. The construction of these models relies on a new diffuse interface definition u (x) u\left(x), which represents the probability of a point x x found in the solute phase among all microstates. Drawing upon principles of statistical mechanics and geometric measure theory, we rigorously demonstrate that the proposed models effectively capture EASE during the solvation process. Moreover, preliminary analyses indicate that the size-modified EASE functional surpasses its counterpart based on the classic PB theory across various analytic aspects. Our work is the first step toward calculating EASE through the utilization of diffuse-interface VISM.

Original languageEnglish
Article number0017
JournalComputational and Mathematical Biophysics
Volume12
Issue number1
DOIs
StatePublished - Jan 1 2024

Scopus Subject Areas

  • Biophysics
  • Molecular Biology
  • Mathematical Physics
  • Computational Mathematics
  • Applied Mathematics

Keywords

  • Poisson-Boltzmann
  • biomolecule solvation
  • ensemble average solvation energy
  • finite size effect
  • variational implicit solvation model

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