Use of Pyrosequencing to Assess Bacterial Diversity in Green-Renovated Buildings

Eric M. Kettleson, Kanistha Chatterjee, Christopher Schaffer, Atin Adhikari, Sergey A. Grinshpun, Stephen Vesper, Tiina Reponen

Research output: Contribution to conferencePresentation

Abstract

Background : Green renovation is designed to improve the energy efficiency and indoor air quality of a building by modifying physical attributes of the structure. These changes can affect ventilation rates and moisture levels which could, in turn, have an effect on the indoor environmental microbiome.

Aims : Investigate how bacterial diversity differs between green-renovated and non-renovated reference residential buildings using pyrosequencing.

Methods : House dust was collected by floor vacuuming from the living room of 20 apartments before and after green-renovation. DNA extracts from the dust underwent 454 pyrosequencing using the 28F-519R bacterial assay which covers the variable regions V1-V3 on the 16s rRNA gene. Sequence files were queried against a database of high quality bacterial sequences with a BLASTN+ search program and classified at the appropriate taxonomic levels based on identity scores. Results: In non-renovated apartments, the three most abundant phyla in the dust were Proteobacteria, Actinobacteria, and Firmicutes at 39%, 26%, and 20% of the operational taxonomic units (OTUs) observed, respectively. In renovated apartments, the Firmicutes relative abundance increased to 28% of the OTUs (p=0.012), which was offset by decreases in the Proteobacteria and Actinobacteria proportions. The increase in the Firmicutes abundance was driven primarily by increases in the Streptococcus (p=0.001), Lactococcus (p=0.025), and Lactobacillus (p=0.027) genera.

Conclusions : These three genera are representative of bacteria that are part of the commensal human microbiome. Renovation activities appear to permit human-related bacteria to initially account for a larger proportion of the overall bacterial composition compared to the non-renovated condition. The data generated in this pilot study provide a baseline measure of bacterial diversity useful in a longitudinal study investigating the change of indoor bacterial diversity following green renovation.
Original languageAmerican English
StatePublished - 2013
EventEnvironment and Health – Bridging South, North, East and West - Basel, Switzerland
Duration: Jan 1 2013 → …

Conference

ConferenceEnvironment and Health – Bridging South, North, East and West
Period01/1/13 → …

Keywords

  • Bacterial diversity
  • Green-renovated buildings
  • Pyrosequencing

DC Disciplines

  • Environmental Health
  • Environmental Health and Protection
  • Environmental Public Health
  • Public Health

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